description: A PEP for nascent RNA samples for the PEPPRO pipeline. imports: - http://schema.databio.org/pep/2.0.0.yaml properties: samples: type: array items: type: object properties: sample_name: type: string description: "Name of the sample" organism: type: string description: "Organism" protocol: type: string description: "Specifies whether the sample is pro-seq or gro-seq" enum: ["PRO", "pro", "PRO-SEQ", "PRO-seq", "proseq", "PROSEQ", "GRO", "gro", "groseq", "GROSEQ", "GRO-SEQ", "GRO-seq"] genome: type: string description: "Refgenie genome registry identifier" read_type: type: string description: "Is this single or paired-end data?" enum: ["SINGLE", "PAIRED"] read1: anyOf: - type: string description: "Fastq file for read 1" - type: array items: type: string read2: anyOf: - type: string description: "Fastq file for read 2 (for paired-end experiments)" - type: array items: type: string umi_len: type: string description: "Length of the Unique Molecular Identifier, if any" required: - sample_name - protocol - read1 - genome required: - samples